rs36974332 SNP Detail

Summary

• ID
  rs36974332
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44383338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG TGTCCTCCTG AGCTGATGCT
  M
  TGGACACTTA ATTCACACTG TTGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50801832	NES13525186	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36974332					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50801832	NES13525186	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44383338 () rs orientation: forward

Symbol	Name	Function Class
Rr548236	regulatory region 548236	431 bp distal
Rr548237	regulatory region 548237	within coordinates
Rr548238	regulatory region 548238	1970 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	within coordinates
Tssr5524	transcription start site region 5524	1460 bp downstream
Tssr156606	transcription start site region 156606	1509 bp upstream
Tssr156607	transcription start site region 156607	1833 bp upstream
Tssr159446	transcription start site region 159446	306 bp upstream
Tssr159447	transcription start site region 159447	131 bp upstream
Tssr159448	transcription start site region 159448	105 bp upstream
Tssr159449	transcription start site region 159449	42 bp upstream
Tssr159450	transcription start site region 159450	28 bp upstream
Tssr159451	transcription start site region 159451	43 bp downstream
Tssr159452	transcription start site region 159452	333 bp downstream
Tssr159453	transcription start site region 159453	392 bp downstream
Tssr159454	transcription start site region 159454	424 bp downstream
Tssr159455	transcription start site region 159455	717 bp downstream
Tssr159456	transcription start site region 159456	839 bp downstream
Tssr159457	transcription start site region 159457	883 bp downstream
Tssr159458	transcription start site region 159458	913 bp downstream
Tssr159459	transcription start site region 159459	1003 bp downstream
Tssr159460	transcription start site region 159460	1040 bp downstream
Tssr159461	transcription start site region 159461	1099 bp downstream
Tssr159462	transcription start site region 159462	1127 bp downstream
Tssr159463	transcription start site region 159463	1173 bp downstream
Tssr159464	transcription start site region 159464	1196 bp downstream
Tssr159465	transcription start site region 159465	1220 bp downstream
Tssr159466	transcription start site region 159466	1241 bp downstream
Tssr159467	transcription start site region 159467	1294 bp downstream
Tssr159468	transcription start site region 159468	1542 bp downstream
Tssr159469	transcription start site region 159469	1612 bp downstream
Tssr159470	transcription start site region 159470	1629 bp downstream
Tssr159471	transcription start site region 159471	1646 bp downstream
Tssr159472	transcription start site region 159472	1682 bp downstream
Tssr159473	transcription start site region 159473	1701 bp downstream
Tssr159474	transcription start site region 159474	1726 bp downstream
Tssr159475	transcription start site region 159475	1771 bp downstream
Tssr159476	transcription start site region 159476	1789 bp downstream
Tssr159477	transcription start site region 159477	1809 bp downstream
Tssr159478	transcription start site region 159478	1819 bp downstream
Tssr159479	transcription start site region 159479	1843 bp downstream
Tssr159480	transcription start site region 159480	1871 bp downstream
Tssr159481	transcription start site region 159481	1920 bp downstream