rs3697479 SNP Detail

Summary

• ID
  rs3697479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84393369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCAGAGAA CCTCAGTCCT TGGCGGGAAG GAGCTGGGCC
  CAGTTGCCCT GACTGTTGCC AGCAGTTTTG CCCACTCAAG GCTCCCAGCC CCAGAGAGCA
  R
  ACATGCATGG GGTGGAGCAG CCCCTGGAGG CCAGTGAAGT GCGGGTGGAG GCGGCACGGA
  GCCGAGGAGC CGCCCCAGGA AGAGGGAGCG GCCTGCCGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
ss5073647	WI_WGS_8_83358322	WI	MOUSE	f	SNP					A	G
ss12750420	Y07611_AN141_1	ROCHEBIO	RPAMM	r	SNP	T			T	T	C	C	T		T
ss46230571	mCV23002213	ABI	CRAMUS_MOUSE	f	SNP		A	A			G		A
ss145359597	ENSMUSSNP2309284	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A
ss322745397	CHEV_8_86190639	CHEVERUD	SCREENING_POP	f	SNP									A		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
rs3697479					SNP	A	A	A	A	A	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84393369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	959 bp proximal
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	within coordinates
Rr666278	regulatory region 666278	1553 bp distal
Rr666279	regulatory region 666279	52 bp distal
Rr666280	regulatory region 666280	within coordinates
Rr666281	regulatory region 666281	1113 bp proximal
Rr666282	regulatory region 666282	1367 bp proximal
Tssr78279	transcription start site region 78279	81 bp downstream
Tssr78280	transcription start site region 78280	23 bp downstream
Tssr78281	transcription start site region 78281	87 bp upstream