rs36975194 SNP Detail

Summary

• ID
  rs36975194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88864126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGAATTC TCCTGTGTTT
  TCTTTTCTTT CTTTCTTTTT TTTTTTTCTC AAGGAGGCTC CTGCATTTTT GTAACATTTA
  TAAGAAACAA ATTTTCAGAA TTTAGGCTTT GCTGTAACCT TAGAGCTTAG AAACCACCTC
  TAGGCTCTCA ACTGACTCAC AACCCAAAAC CAAGCCCCAA ACACTTCCAC ATGGCCCAGC
  R
  ATCCTCTCAG TACTTTAATG CCATGAACAT CAGACTATAG CAGGCAACTA TACAGAGCAC
  AACCGTTGTT CCTTCTTGTG CGGGTCCCTG TATTACAGCA AGCCCAGCTT ATGTTCCACC
  ATCAAGTAGG GCTCGCCCAT TAGTTCACTT TGTGATGGAT CATTAAGAAT ATCCTCAAAA
  CCAATGGTCT CATCGCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51740319	NES14559936	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	A	G		A	A	G	A
ss148329563	ENSMUSSNP3360845	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36975194					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51740319	NES14559936	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88864126 () rs orientation: forward

Symbol	Name	Function Class
Gm8702	predicted gene 8702	98 bp downstream
Mlc1	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	934 bp upstream
Rr507763	regulatory region 507763	927 bp distal
Rr507764	regulatory region 507764	426 bp distal
Tssr135827	transcription start site region 135827	1974 bp upstream
Tssr135828	transcription start site region 135828	1359 bp upstream
Tssr135829	transcription start site region 135829	1326 bp upstream
Tssr135830	transcription start site region 135830	1114 bp upstream
Tssr135831	transcription start site region 135831	931 bp upstream
Tssr135832	transcription start site region 135832	501 bp downstream