rs36975423 SNP Detail

Summary

• ID
  rs36975423
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151994188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTAACAC TCTGAGTGAA
  GCTCTCAGGA AAGGCTCTGC CTCACTCAGC CCAGAGAGGA TGAGACCCAG GCAGTACGGT
  CCCTGCTCCA CGTTTCCAGT GCTCTGCTCT CCGGCCTCTT CCTGAAGAAG CCTGGCTTGA
  GGAGGTAGCA GCCACACCTG GTTATAGCAG CAGATCTACC AACAGGCCTC ACCAGACATC
  K
  CCAGAGGCCA CAGGCAGTTC TAAGTTATTA CAAATAGCCT GGCCATGGCA TAAATGAATG
  CTGTTTGTGC CAGCCAGGGT GGTGCACATC TGGGGTTCCA ACACCCACAA GGCCGAGGGA
  AAAGGATCAG CGCACATTTG AGTCTAGCCT GATCTACAAA GTGAGTTCCA GGCCAGCCGG
  AGGAGCCAAC AGGCTCTGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51060144	NES13425299	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	G	G	G	T	T	T		G	T	T	G		G
ss136101747	ENSMUSSNP5522211	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						T
ss321028593	CHEV_3_151951515	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36975423					SNP	G	G	G	T	G	G	G	G	T	T	T	T	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060144	NES13425299	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151994188 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Tssr32405	transcription start site region 32405	1775 bp upstream