rs36975759 SNP Detail

Summary

• ID
  rs36975759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190732672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGGGTA AGTCCATTCC
  AGTCAACAAA GAGTTGACAT CACAATTCCA CTCCCTAGCA TCTTGACACC CAAACACATC
  CCTTTATTTA CTTAGGTTTG AGAGGAATAT ATACATATAT ATACACACAC ATATATATAC
  ACATATGTAT ATATATACAC ATACATATAA ATACACACAG AGACCTTAAC TTCTTTTTTA
  Y
  CACGTTCTTC AACTTCATTC AATTACATTT ATTAGCAATA TCCCAGAAGT ATATAACATA
  TTCAAAAAAT AATTTCATGC TATCAAAAGA TGTTCACTTT ACTCTACTGT TTGTCTTCAT
  TCCAGGCCAC GTAGACAAGC GACCAGAACC ATGTGAAAAC AAACAACGGT AACAGTTGCA
  GCATAAGAAT AGCTGTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51424216	NES14445412	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36975759					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51424216	NES14445412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190732672 () rs orientation: forward

Symbol	Name	Function Class
Gm8407	predicted gene 8407	950 bp downstream
Gm37095	predicted gene, 37095	119 bp downstream
Gm70616	predicted gene, 70616	219 bp upstream
Rr426021	regulatory region 426021	1925 bp proximal