rs36976185 SNP Detail

Summary

• ID
  rs36976185
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52215335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCAGG TTAACACACA
  CACACACACA CACACACACA CACACCACTC TAACGTGACA CTAAAGGAAC ACTTTCAGGT
  TGACAATATA TGTAATCCAA ATGCCTTGCC ATCAAAGATA AAAAATGTAT GTGTGGAGTG
  TCATAAGCAG ACATCTGTTC TTTATTAATG AGCCACCTGA CTATCAGCAG GAATGCAGAG
  M
  ACAGTTTTAT AGCCCTGTAC TGTTAAGCAG GCTGAGAGGC CGCCTGCTCA TAAGCTTTCT
  AGCGATTTAC TCAACAAAGC TATTCAAGTG TTATTATCAA AAGAAAGTAC CCCCTTTTCT
  CCAGGAAAAG AAAAAGGTTA ATATATTTCT ACACCCAACC ATGTCTACAA ATCTGCCCTG
  CTCTATTTTA TTGGGGGTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50950453	NES13932099	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36976185					SNP	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50950453	NES13932099	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52215335 () rs orientation: forward

Symbol	Name	Function Class
D1Ncl2	DNA segment, Chr 1, Nicolas C. Levy 2	90 bp distal
Gls	glutaminase	within coordinates
Rr22237	regulatory region 22237	735 bp distal
Rr33831	regulatory region 33831	within coordinates
Tssr6673	transcription start site region 6673	1200 bp upstream