rs3697660 SNP Detail

Summary

• ID
  rs3697660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53859199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAACCCCA AGGAGCCTAT
  TTTTAAGCCA CTAAGCCTTT CCCCTGTTTT ATTAACTTAT TCCTGGCTAC AACAAGACAT
  ACTTTTTGTT GATGAGCTAA AGGTTGTATT AGCTTTTTAT TTTCTCGGTA AACTTATCTA
  TTCTCTGGGA AGAGGGGGAG AAAAAAAAGG AATGTACATT CCCGGAGAAG AAGAAAACAG
  R
  TCTCACCCAC CTCCCCCGTT CTAGTAAAGA TCTCTGTAAA CACTGCCCTG GAAACTGGAG
  GCAGGGGGAT TCAGGACAGG GAATGAGAAA ATAAAATGTA AACATAAAAC AGGCACAGGC
  CTAAAAGTAA AACGGCCTGC GGGTCTACTG GGGAACACCA CTCTCCAGCC AAGGGAACCC
  GGCTCACAGG ACTCCTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5073830	WI_WGS_12_48256872	WI	MOUSE	f	SNP	A			G
ss137760062	ENSMUSSNP1226118	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3697660					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53859199 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	802 bp proximal
Rr267638	regulatory region 267638	within coordinates