rs3697665 SNP Detail

Summary

• ID
  rs3697665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53859205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGGAGC CTATTTTTAA
  GCCACTAAGC CTTTCCCCTG TTTTATTAAC TTATTCCTGG CTACAACAAG ACATACTTTT
  TGTTGATGAG CTAAAGGTTG TATTAGCTTT TTATTTTCTC GGTAAACTTA TCTATTCTCT
  GGGAAGAGGG GGAGAAAAAA AAGGAATGTA CATTCCCGGA GAAGAAGAAA ACAGGTCTCA
  Y
  CCACCTCCCC CGTTCTAGTA AAGATCTCTG TAAACACTGC CCTGGAAACT GGAGGCAGGG
  GGATTCAGGA CAGGGAATGA GAAAATAAAA TGTAAACATA AAACAGGCAC AGGCCTAAAA
  GTAAAACGGC CTGCGGGTCT ACTGGGGAAC ACCACTCTCC AGCCAAGGGA ACCCGGCTCA
  CAGGACTCCT GTTTGCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5073835	WI_WGS_12_48256878	WI	MOUSE	f	SNP	T			C
ss38910592	mCV22363464	ABI	CRAMUS_MOUSE	f	SNP		T	C	C
ss137760065	ENSMUSSNP2093998	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3697665					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53859205 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	796 bp proximal
Rr267638	regulatory region 267638	within coordinates