rs36976974 SNP Detail

Summary

• ID
  rs36976974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9963390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTAACA AATAGTGAGG
  CTGGCCCTTG AGCTACACTA GCTAGAGTCT CAGTTCTGTC TCAAGGCTAC CTGCAAGAGG
  CTAGCCAACC ATCCCTGCAA GAACCACCTC ATTACTTCCC AAGAGACATC ATTTCAGCAT
  TCTGTTAGTA TTGCACTTGC TAGAAGTTTG TTGCTCATAT CAAGCCCTTA GGTGGAGTGA
  R
  CAAAAGGCCT CTATCACAGG GTTCTTTCCT AGGTAGTTGG CATTAACCCT CAGCTAGTGT
  AGGAACACAA GTTTCCCCCA CAGGTCAGTA GTAATGAACT GGGGATTTGT TGGGTAGACT
  CAGAACTGAA ATGGCAGGCA CAGGGAATGC AGCTCTTTGG GTGGACAGAC CTGTAGGGAT
  AGGACTCTGC ATGCTCCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50605170	NES13645702	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36976974					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605170	NES13645702	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9963390 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	within coordinates
Fth1	ferritin heavy polypeptide 1	928 bp downstream
Rr543967	regulatory region 543967	1444 bp distal
Rr543968	regulatory region 543968	1271 bp proximal
Tssr155006	transcription start site region 155006	1807 bp downstream
Tssr155007	transcription start site region 155007	1734 bp downstream
Tssr155008	transcription start site region 155008	1443 bp downstream
Tssr155009	transcription start site region 155009	1097 bp downstream
Tssr155010	transcription start site region 155010	909 bp downstream
Tssr158137	transcription start site region 158137	1789 bp upstream
Tssr158138	transcription start site region 158138	1700 bp upstream
Tssr158139	transcription start site region 158139	1407 bp upstream
Tssr158140	transcription start site region 158140	1186 bp upstream
Tssr158141	transcription start site region 158141	1158 bp upstream
Tssr158142	transcription start site region 158142	1133 bp upstream
Tssr158143	transcription start site region 158143	1067 bp upstream
Tssr158144	transcription start site region 158144	929 bp upstream