rs3697711 SNP Detail

Summary

• ID
  rs3697711
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137640683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTAAGGAT ACAGGTACTG
  ATCTTGGCCC CACAGCTCAG TTGTGAAGTT GCCAGGGAAG CTGCACTGAG GGCTGGGGAG
  GAAGGCCAAG GCCACCAAGC TAGCAGGCTC TCTCCTTCAG GGGTCCCGGT GAGAAACTAT
  GAAGATGTCT TTCTCTTGGA TCCTCTGCTA CCATGTGGGC AGCGTGTTCC CCTAATCCTG
  W
  CCAAGCCCCC TCAGCAGGTA AGAGTGAGCC TCCCTCCATT CTCTTCTCCC TTTCTCCATT
  CAAAGCCGGG AGGACAAGCT TCCCTTTTTT TGTCTTCTCA GGCAATGGAC TCCAGGAAGC
  TGCTGCTCCC ACCGCCCATC ATGTCGCCCT CTGTGCATCC GTCCTCATCC CAGGCCTGCT
  CCTCCACCTG GCTCAGCGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss5073881	WI_WGS_5_136358925	WI	MOUSE	f	SNP	T	A
ss321702668	CHEV_5_138083649	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs3697711					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137640683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	930 bp distal
Gm20605	predicted gene 20605	within coordinates
Irs3	insulin receptor substrate 3	611 bp downstream
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	1322 bp downstream
Sap25	sin3 associated polypeptide	within coordinates
Tssr49364	transcription start site region 49364	1086 bp downstream