rs36977371 SNP Detail

Summary

• ID
  rs36977371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44842113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAGGAG GAGGAGGAGA
  GAGAGAGAGA GAGAGAGAGA GAATAGGATT GACATTGGCC TGTGGGCACT GACACCAAAT
  ATCTGGGTCC AAGAAGATCT TAATGCAGAC TCACTAGAGT AACATATCTA GACTCAGTTA
  CCAATTAGAT ATGAAGATGA AGAAATGAGG CAGAGCAAAA AATGACTACC TCCAAGCTGT
  R
  TTCCATGAAC CTGGATCCTG GTAGATCCAT CCACAGAGAT GAAAAGAGGG TCTGATTTGG
  GACTGCAAAA AAGGAGCATG ACTTTGGATA TTGAGAATCC CATGCCTGAG ATGGGCATGC
  CTGGGCATGA TGCCCCATAA ACAGAGTTAC AGGGAAACGA CTCAGGGCAT TGGGAGATAT
  ATACTTCTGC CCCAGTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50797995	NES13526756	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36977371					SNP	G	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50797995	NES13526756	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44842113 () rs orientation: forward

Symbol	Name	Function Class
D19Mit27	DNA segment, Chr 19, Massachusetts Institute of Technology 27	503 bp distal
Gm5246	predicted gene 5246	1698 bp downstream
Rr394467	regulatory region 394467	within coordinates