rs3697801 SNP Detail

Summary

• ID
  rs3697801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137640721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGTGAAG TTGCCAGGGA
  AGCTGCACTG AGGGCTGGGG AGGAAGGCCA AGGCCACCAA GCTAGCAGGC TCTCTCCTTC
  AGGGGTCCCG GTGAGAAACT ATGAAGATGT CTTTCTCTTG GATCCTCTGC TACCATGTGG
  GCAGCGTGTT CCCCTAATCC TGACCAAGCC CCCTCAGCAG GTAAGAGTGA GCCTCCCTCC
  R
  TTCTCTTCTC CCTTTCTCCA TTCAAAGCCG GGAGGACAAG CTTCCCTTTT TTTGTCTTCT
  CAGGCAATGG ACTCCAGGAA GCTGCTGCTC CCACCGCCCA TCATGTCGCC CTCTGTGCAT
  CCGTCCTCAT CCCAGGCCTG CTCCTCCACC TGGCTCAGCG AGGCAGAGAT GATCGCCCTT
  GCTGGTCTGC TGCAGATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss5073971	WI_WGS_5_136358963	WI	MOUSE	f	SNP	G	A
ss321702669	CHEV_5_138083687	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs3697801					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137640721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	968 bp distal
Gm20605	predicted gene 20605	within coordinates
Irs3	insulin receptor substrate 3	573 bp downstream
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	1360 bp downstream
Rr622927	regulatory region 622927	1012 bp distal
Rr622928	regulatory region 622928	1207 bp distal
Rr622929	regulatory region 622929	996 bp distal
Rr622930	regulatory region 622930	867 bp distal
Sap25	sin3 associated polypeptide	within coordinates
Tssr49364	transcription start site region 49364	1124 bp downstream