rs36979209 SNP Detail

Summary

• ID
  rs36979209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5820707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTGCTC GTGCCTTGAG
  GTATGTTCCC AGGGGGGTCA CAGCCTCTGT CACGATGTGG AGGCACTTTT CTGTCTGAGT
  AAGAAAAGGG GTATCAGGGC ACGGTGCCAG AAGAGGAAGG GAAGATGAGG GGCGTGACAG
  GGAAAGAGGC AGTGGAGAAG ATACCAAATC TGAAGCTACT GAAGCACTTG GGTACAAAGT
  R
  AGGGCCTGAG GAGAGTAAGA TGGGTAGATC GGGCGACAGG TACCTCCAAC CCATCGATAT
  AGGCCAGGAT GTTGGGGTGT CGGAGAGTTT TGAGGCGTTT GAAGGCAGCT TTGGCCACCT
  GGGTCTGCTC TTCAGCTCCC GGTTTCACAT CATACACGAA GATGGACACT GCGCTGCCTG
  TGGCCTGGTG GAGGACAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577548	NES13649374	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36979209					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577548	NES13649374	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5820707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10479	CpG island 10479	within coordinates
Gm59602	predicted gene, 59602	769 bp upstream
Gm59603	predicted gene, 59603	791 bp downstream
Rr363624	regulatory region 363624	within coordinates
Rr405811	regulatory region 405811	586 bp upstream
Scyl1	SCY1-like 1 (S. cerevisiae)	within coordinates
Tssr157640	transcription start site region 157640	591 bp downstream
Tssr157641	transcription start site region 157641	664 bp downstream
Tssr157642	transcription start site region 157642	697 bp downstream
Tssr157643	transcription start site region 157643	733 bp downstream
Tssr157644	transcription start site region 157644	939 bp downstream