rs36979679 SNP Detail

Summary

• ID
  rs36979679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:118282445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGGTAA AGAAACAAGA
  AGAAAAAGTC TCTTTATCCT CACACAGCCA AAGCTAACGC AGGGTGAGGC TAAGCAAGAC
  ACACTGAGAT AGGGTGAGGC ATGCTCTATC AAGCTACAGG CTTCTTTACA GTGGGCCACA
  CTATAAACTG GCCTTGAGAT GAATGTGAAA TGCCATCTTT TGCTTTGATT CTGGGCAGAA
  R
  TCACAGCCTC CCAACAAATG CCTATTTCGT CGGCCTATTT CCCACATTCA ACATGGAAGG
  CAGTCCCACT AAGAAAGGCC TGCAGAGCCT GGGTGCCAGC TCCGTTCTCT TCCTCATGCT
  ATAGACCTCC CCTATCACCC TTAAGCCTGC CTGCTGGTGA CTCACTGCCC CTTAACTTAT
  CCCACTGTAA ACAGACACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51188625	NES13833134	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36979679					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51188625	NES13833134	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118282445 () rs orientation: forward

Symbol	Name	Function Class
Fbxw8	F-box and WD-40 domain protein 8	Intron
Rr618824	regulatory region 618824	294 bp distal
Rr618825	regulatory region 618825	1559 bp proximal