rs36980391 SNP Detail

Summary

• ID
  rs36980391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118056177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCACTGG CTTCTGGCTG
  GGTAGAGATG CAGCTTGTGC AGTCTGCTAA TGGCAGCAGT TAGACACATT GTTTTTAACC
  GGCTCACATC CCCTTCCCCC AGAAACAAGT TCGATGTCTG GCTGCTTCAC ATCTGTGCCA
  ACATTTGTCG TTGTCTATCT CCTGCTTTAG CCATTTTGGT GGTTGTGTAA CAGTGTTCAA
  Y
  GTTCCTGGGT GGTTGGAATC CTTTCCGACA GAATGCTGGG AAACGGTCAT TCATCCTTGG
  ATGATGGTGT TGTTACTGTT GAAGCAGAGG GGCTTGAAAC GGATGCTTTT CTGATGCTGG
  GAGACGGACT CGTCCCTCTG CGCAGTGCCT CTGCCTGCTG CAGATCCTAG GACTAACCAG
  ATGCAAGGAA TCCCGGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51982240	NES14998176	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	T	T		T
ss322840384	CHEV_8_119853338	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36980391					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51982240	NES14998176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118056177 () rs orientation: forward

Symbol	Name	Function Class
Cmip	c-Maf inducing protein	within coordinates
Tssr79599	transcription start site region 79599	560 bp downstream
Tssr79600	transcription start site region 79600	958 bp upstream