rs36980915 SNP Detail

Summary

• ID
  rs36980915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29231333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAATTTA CTTTCTCAGA
  ACCTTGTGTG GGGGTCGATT GGATGCATGC AGAGCAGTAA ATGGTTTGGT CGCTTCTGAA
  CGTCTTAGCT TCTCAGAGCT GGGCAGGCAA AGGAGGTTCC TAGCTGGCCC GTGCGTAGCT
  GGTCAGTCCC TGGTGCGGCT TCCATAGAGC ATAGAGAAAC TGCATGCTAG TGTATCTACA
  R
  CCTCTGTATG GAAGGGTTTG ATGCCTAAGC CCCGTGGTGC TGCCCCCTGG TGGTTAAGAT
  GCGCAAAGAC TTGTCCTTTG CTCCTCCCCC ATTACACTGT TTTTCCTTTT TAGGCTCCCT
  CGCTTAGTTC TTAGTTTCCC AAACTGTGTC AGGTGTTAGA GCACCAGGGA AGGCTGGCTC
  TCACCACTTA ACCTGAGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50753209	NES13566099	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36980915					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50753209	NES13566099	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29231333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	1478 bp distal
Gm41829	predicted gene, 41829	1608 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	within coordinates
Tssr155784	transcription start site region 155784	1620 bp downstream
Tssr155785	transcription start site region 155785	1491 bp downstream
Tssr155786	transcription start site region 155786	1448 bp downstream
Tssr155787	transcription start site region 155787	1343 bp downstream
Tssr158749	transcription start site region 158749	1828 bp upstream