rs3698152 SNP Detail

Summary

• ID
  rs3698152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53859230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCCTTTC CCCTGTTTTA
  TTAACTTATT CCTGGCTACA ACAAGACATA CTTTTTGTTG ATGAGCTAAA GGTTGTATTA
  GCTTTTTATT TTCTCGGTAA ACTTATCTAT TCTCTGGGAA GAGGGGGAGA AAAAAAAGGA
  ATGTACATTC CCGGAGAAGA AGAAAACAGG TCTCACCCAC CTCCCCCGTT CTAGTAAAGA
  Y
  CTCTGTAAAC ACTGCCCTGG AAACTGGAGG CAGGGGGATT CAGGACAGGG AATGAGAAAA
  TAAAATGTAA ACATAAAACA GGCACAGGCC TAAAAGTAAA ACGGCCTGCG GGTCTACTGG
  GGAACACCAC TCTCCAGCCA AGGGAACCCG GCTCACAGGA CTCCTGTTTG CAGAGAGCTG
  GGCACTTCTC TGTGCTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5074326	WI_WGS_12_48256903	WI	MOUSE	f	SNP	C			T
ss39029220	mCV22363463	ABI	CRAMUS_MOUSE	f	SNP		C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3698152					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53859230 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	771 bp proximal
Rr267638	regulatory region 267638	within coordinates