rs36983206 SNP Detail

Summary

• ID
  rs36983206
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131566322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTATCTCC ATTTGCAGCT
  GAGGTGGCCA AGAGATAAGA GTTGCTTAAA GTCGGAGTTA GCAAACAACA AAACGGGGTT
  TCCACACAGA GCTCAGCTTC GGAGCCCAAC CCATCCACTT ACTACAAGAA AACGAAATTC
  TTGACATTTT GGGTTATATC CGGTAACTTC AAAGGTAAGT GGTTTATAAT CTTGTTACAA
  W
  TTTTTCTGGG AAATGACAAT CTCATGCTTT AGTTAACAAA AATCCATTTA TTATGATAAT
  TTCCTCACAG GTAAAAGTGA GCACCTCCTA AGAAGGCTGC CATTTGCTTG GTTTGTAAGA
  TTGATTTTCC TACGGGGAGC TTTGCGTAGG ACTTTGAAGT TTTTGTTTTA TTTGCTTGGT
  TGATTTTTTG AGACATGGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	WSB/EiJ
ss51366982	NES14473842	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T		A	A
ss145480074	ENSMUSSNP624738	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	WSB/EiJ
rs36983206					SNP	A	A	A	A	A	A	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366982	NES14473842	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131566322 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	within coordinates
Rr12195	regulatory region 12195	922 bp distal
Rr28482	regulatory region 28482	within coordinates
Rr366988	regulatory region 366988	187 bp downstream
Tssr8635	transcription start site region 8635	288 bp downstream
Tssr8636	transcription start site region 8636	246 bp downstream
Tssr8637	transcription start site region 8637	221 bp downstream
Tssr8638	transcription start site region 8638	180 bp downstream
Tssr8639	transcription start site region 8639	100 bp downstream
Tssr8640	transcription start site region 8640	88 bp downstream