rs36983647 SNP Detail

Summary

• ID
  rs36983647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44148326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC TTACCTAAGT GGAGAACATC
  R
  CTCCGTTTTC TGCCCTGGTA AGATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51891404	NES14911138	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	G		A	A	A		G
ss322199057	CHEV_7_51754272	CHEVERUD	SCREENING_POP	f	SNP								A				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs36983647					SNP	G	G	G	A	G	A	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891404	NES14911138	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44148326 () rs orientation: forward

Symbol	Name	Function Class
4921540A03Rik	RIKEN cDNA 4921540A03 gene	1179 bp upstream
Cpgi18969	CpG island 18969	1748 bp distal
Cpgi18970	CpG island 18970	1137 bp proximal
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Rr380742	regulatory region 380742	827 bp downstream
Rr646109	regulatory region 646109	1968 bp distal
Rr646110	regulatory region 646110	1920 bp distal
Tssr66391	transcription start site region 66391	1649 bp downstream