rs36984960 SNP Detail

Summary

• ID
  rs36984960
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81440032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAATTAT CAGTGACCTG
  TGCCAGTGAG AGGGGAGTTA AGGAGGAGGA CAGAGACTGT GACAAATGTC AAAGGGCGAC
  AGCATTCAGA TTCACAAACA GGTGAGACTG GAATGTGAGT GCTGAAAACA GCCACTAAAG
  GTTGGGATCA GAATGGGATG TCTCATTTTA CTCTCCCAGA GACACCCTTT CCACATGACA
  M
  GTTAAGTGGT GTGTTGTGAG AAAGTGGCTA AAGCCTAAGA CTCAGGTGAT TCAGGTGTTA
  AACCACACCA CACCTTTTTT GAAATACATT ACAAATAGAG GCACAAAGTG GAGCCAAAAC
  TATACTGTAG TAATTTGATG AATTTTGAGG TGAAATCATG ATGCCCTAAA AATATTTACA
  TTACGATTCA TAACAGTAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50427649	NES14133614	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36984960					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50427649	NES14133614	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81440032 () rs orientation: forward

Symbol	Name	Function Class
3110040N11Rik	RIKEN cDNA 3110040N11 gene	806 bp upstream
Btbd1	BTB domain containing 1	1790 bp downstream
Cpgi19360	CpG island 19360	539 bp distal
Gm45016	predicted gene 45016	within coordinates
Gm45845	predicted gene 45845	within coordinates
Rr168121	regulatory region 168121	31 bp distal
Rr400414	regulatory region 400414	655 bp downstream
Tssr73353	transcription start site region 73353	794 bp upstream