rs3698519 SNP Detail

Summary

• ID
  rs3698519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13840444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGG TGGGGAGAGG GTGCTACGGC
  Y
  CCGGGAGCTC CTGAACGCTC GAATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5074695	WI_WGS_10_13854758	WI	MOUSE	f	SNP	T			C
ss38569900	mCV23171746	ABI	CRAMUS_MOUSE	f	SNP		T	C	C
ss146837595	ENSMUSSNP1960450	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3698519					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13840444 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	1074 bp upstream
Cpgi1318	CpG island 1318	within coordinates
Gm56954	predicted gene, 56954	within coordinates
Gm66890	predicted gene, 66890	within coordinates
Hivep2	human immunodeficiency virus type I enhancer binding protein 2	1375 bp upstream
Rr384171	regulatory region 384171	within coordinates
Rr427854	regulatory region 427854	70 bp distal
Rr427855	regulatory region 427855	within coordinates
Rr427856	regulatory region 427856	1032 bp proximal
Rr427857	regulatory region 427857	1567 bp proximal
Rr427858	regulatory region 427858	1690 bp proximal
Tssr3141	transcription start site region 3141	1411 bp upstream
Tssr92402	transcription start site region 92402	53 bp downstream
Tssr92403	transcription start site region 92403	96 bp upstream
Tssr92404	transcription start site region 92404	127 bp upstream
Tssr92405	transcription start site region 92405	149 bp upstream
Tssr92406	transcription start site region 92406	314 bp upstream
Tssr92407	transcription start site region 92407	539 bp upstream
Tssr92408	transcription start site region 92408	558 bp upstream
Tssr92409	transcription start site region 92409	590 bp upstream
Tssr92410	transcription start site region 92410	628 bp upstream
Tssr92411	transcription start site region 92411	1079 bp upstream
Tssr92412	transcription start site region 92412	1151 bp upstream
Tssr92413	transcription start site region 92413	1183 bp upstream
Tssr92414	transcription start site region 92414	1393 bp upstream
Tssr92415	transcription start site region 92415	1474 bp upstream
Tssr92416	transcription start site region 92416	1506 bp upstream
Tssr92417	transcription start site region 92417	1539 bp upstream
Tssr92418	transcription start site region 92418	1568 bp upstream
Tssr96784	transcription start site region 96784	944 bp downstream
Tssr96785	transcription start site region 96785	962 bp downstream