rs3698616 SNP Detail

Summary

• ID
  rs3698616
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56596673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAATGTGTT TGAATACGAA TTTTGAGTGC ATCCGCAGGT
  AGAATTTATT ACCTCTAACA TGCAAGAAAA GTAAAGGCAC ACGGAGTGAC TGTTCCAAAA
  K
  CAATACAATG AGTTAAAAAG GGAGCTTGGT CTTGGCCCTG GATTGCTTTA TTTTATTCAC
  TGTCTGGTTC CCACAGAATT TGAGGTGGCT TTGAAAGAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5074796	WI_WGS_4_55494198	WI	MOUSE	f	SNP	T						G
ss38021958	NES09391499	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		G	T	G	G		G	G	T	G		G
ss45706038	mCV23143195	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				G		T
ss146378641	ENSMUSSNP991792	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss321132947	CHEV_4_56609545	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3698616					SNP	T	T	T	T	T	T	G	G	T	G	G	T	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38021958	NES09391499	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56596673 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	1574 bp proximal