rs36987823 SNP Detail

Summary

• ID
  rs36987823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114860107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAGTCCT GGCTGTCCCA
  GAACTCACTT TGTAGACCAG GCTGCCCTGG AACTCAAGAG TAATCTGCCT GCCCCTACCT
  CCCAAGTGCT GGGATTAAAG GCATGTACCA CCATGCCCGG CAAGCGTAAT TAATTTTTAA
  TTTTTTAAAA TTAAGTACTT TTTACAACTG CTTATTGCAA ATTTTCTCAC ATGCTCCATG
  R
  TTTTGAAGAA GCCCACGCTA CTAGACAGCA ATCTTTTTTT TTTTTTTTTT TTTTTAGTGT
  ATTCAACACT TTAAATCCGG TCAGCACCAC CTTCGGACCT AACTCCGCCC CGAACACGCC
  CTACCTATAG GCCCCGCCCC TAGCACTTCG GGCGTCTTTG AAGGGCCCCG CCCTCAGCCT
  CTCCTCCCTG AAAAGTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51975813	NES14993946	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36987823					SNP	A	G	G	A	A	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51975813	NES14993946	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114860107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	83 bp proximal
D8Mit139	DNA segment, Chr 8, Massachusetts Institute of Technology 139	1584 bp proximal
Gm56821	predicted gene, 56821	382 bp upstream
Nudt7	nudix hydrolase 7	207 bp upstream
Rr401147	regulatory region 401147	42 bp upstream
Rr670352	regulatory region 670352	1881 bp distal
Rr670353	regulatory region 670353	within coordinates
Rr670354	regulatory region 670354	286 bp proximal
Tssr79531	transcription start site region 79531	202 bp upstream
Tssr79532	transcription start site region 79532	234 bp upstream
Tssr79533	transcription start site region 79533	268 bp upstream
Tssr83007	transcription start site region 83007	1772 bp upstream
Tssr83008	transcription start site region 83008	1763 bp upstream