rs36988414 SNP Detail

Summary

• ID
  rs36988414
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5538553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTTGTG TACTGACTGT TAAAAAGGAG GACAGCGCCC
  CCTGTGACTG GGAGGGCCGG TGTGGGGGTA CACTCAGAAA CCTGAACTTG GCTTGCTTCA
  W
  GGTCTCATAA GGCTATTTCA GGCTCACTAT CGTAGAAGAG GCTGGGAAAA AGAGGGCTTA
  AGAAAAGTGG AGGAGAGGGA CGGACACAAG TCCAAGAATA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50578872	NES13652099	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36988414					SNP	A	A	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578872	NES13652099	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5538553 () rs orientation: forward

Symbol	Name	Function Class
1700061A03Rik	RIKEN cDNA 1700061A03 gene	219 bp downstream
Cfl1	cofilin 1, non-muscle	1930 bp upstream
Cpgi10453	CpG island 10453	155 bp distal
Cpgi10454	CpG island 10454	389 bp proximal
Cpgi10455	CpG island 10455	1728 bp proximal
Gm59148	predicted gene, 59148	661 bp upstream
Mus81	MUS81 structure-specific endonuclease subunit	92 bp upstream
Rr363568	regulatory region 363568	within coordinates
Rr370432	regulatory region 370432	within coordinates
Rr405805	regulatory region 405805	474 bp upstream
Rr405806	regulatory region 405806	1648 bp upstream
Tssr154437	transcription start site region 154437	793 bp upstream
Tssr154438	transcription start site region 154438	1950 bp upstream
Tssr154439	transcription start site region 154439	1987 bp upstream
Tssr157605	transcription start site region 157605	129 bp upstream
Tssr157606	transcription start site region 157606	416 bp downstream
Tssr157607	transcription start site region 157607	435 bp downstream
Tssr157608	transcription start site region 157608	521 bp downstream
Tssr157609	transcription start site region 157609	552 bp downstream