rs36988922 SNP Detail

Summary

• ID
  rs36988922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39148061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCTTACT ATTGGCCTTA
  GAAATTGCAT AGATAAATCA TATTTGCATA GTATGCTAAT TAAGTCAATT ATAAAACTAC
  ATAGAAGTAA CACTGACTGT AAAACCAATG TATTATATAT AAGCCTTCTA AGTGTCAGTG
  ATTTCTTGTG GGTAGCTTAA AATGACAAAA ACAAACAAGC AAAAACAGTA AATTGGGATA
  Y
  GAACACTGTC CACTGTTTCC TGGGTCTCAG TCTCCTCATG CATAAAAAAG AAGACTGGCA
  TTTCCCTTTA GTTTCTACAA TGCTGGAGAG ACTAAGTTTT AAAAGGAGGG CACTGAGGGA
  TCTGTAAACA AGTTCATCAG GACAAATAAT TTTTGCTTCA CTGGTTGTGT CTTCTAATAT
  TCTCCCTGAA GAGTCTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51608103	NES14845844	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36988922					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608103	NES14845844	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39148061 () rs orientation: forward

Symbol	Name	Function Class
Gm67109	predicted gene, 67109	within coordinates
Kdm7a	lysine (K)-specific demethylase 7A	within coordinates