rs3698991 SNP Detail

Summary

• ID
  rs3698991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26386837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC AGGAAGTTAT CAGCAGTCCC
  Y
  AGGACTGAGG TAAATGCCAT GCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5075177	WI_WGS_3_26157475	WI	MOUSE	f	SNP	C		T
ss45499317	mCV22681638	ABI	CRAMUS_MOUSE	f	SNP		C	T	C
ss134694013	ENSMUSSNP500726	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss320687282	CHEV_3_26231610	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3698991					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26386837 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	within coordinates
Cpgi13015	CpG island 13015	554 bp distal
Cpgi13016	CpG island 13016	484 bp proximal
Nlgn1	neuroligin 1	228 bp upstream
Rr77454	regulatory region 77454	within coordinates
Tssr32829	transcription start site region 32829	1634 bp upstream
Tssr32830	transcription start site region 32830	1174 bp upstream
Tssr32831	transcription start site region 32831	868 bp upstream
Tssr32832	transcription start site region 32832	839 bp upstream
Tssr32833	transcription start site region 32833	787 bp upstream
Tssr32834	transcription start site region 32834	771 bp upstream
Tssr32835	transcription start site region 32835	745 bp upstream