rs36989952 SNP Detail

Summary

• ID
  rs36989952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:27837576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTTTCA AATCTAAAAT
  TCATGGGAAG GACTGGAATA TCCAAAAAGG GGAAAACGGA TGTGGGCTCC TTCCTGACCC
  AGGGAACCAC AGAGGTTTGT CACGAAAGAT AGTCTGTCAA GTTGCAAGAT CAAATTCAGT
  GATTATTCTT TGGTTGTAAC ACTCCCATGA CTCCCAATGC CCTCTGAAAA ATATCAAAGA
  Y
  GACTAGCCAG GCGCCCATCC ATTCAGTCAA TAAACCTGTC ATAACTCCAC AAGAGCCTGT
  ATCTGTGCTG GCCATGTGGA GGACAAAGCA GGAGCCAACG GTGACTTGTC TGCCATGTAG
  TAGACAACTC AGCGAAATGC TGAAGAGGCA TACAGGCCAG TGAGGGGTGA AACCGATGTC
  AGGCCAGAGC TGAAGACTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51887439	NES14907471	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	C	C	T	C	T
ss148632161	ENSMUSSNP2801717	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36989952					SNP	T	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887439	NES14907471	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27837576 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	Intron
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	231 bp distal
Rr644171	regulatory region 644171	318 bp distal
Tssr2159	transcription start site region 2159	1991 bp upstream
Tssr65386	transcription start site region 65386	1040 bp downstream
Tssr65387	transcription start site region 65387	707 bp downstream
Tssr65388	transcription start site region 65388	609 bp downstream
Tssr65389	transcription start site region 65389	555 bp downstream
Tssr65390	transcription start site region 65390	1571 bp upstream
Tssr65391	transcription start site region 65391	1602 bp upstream
Tssr65392	transcription start site region 65392	1624 bp upstream
Tssr65393	transcription start site region 65393	1762 bp upstream
Tssr65394	transcription start site region 65394	1811 bp upstream
Tssr65395	transcription start site region 65395	1926 bp upstream
Tssr71448	transcription start site region 71448	1044 bp upstream
Tssr71449	transcription start site region 71449	1031 bp upstream
Tssr71450	transcription start site region 71450	1019 bp upstream
Tssr71451	transcription start site region 71451	612 bp upstream
Tssr71452	transcription start site region 71452	1615 bp downstream
Tssr71453	transcription start site region 71453	1638 bp downstream
Tssr71454	transcription start site region 71454	1665 bp downstream
Tssr71455	transcription start site region 71455	1976 bp downstream