rs36990014 SNP Detail

Summary

• ID
  rs36990014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103059537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTCAATG TGTGATGCTG
  GGTGGCTCAG GGACACTGAA GCCTAGGGCA CCTGCCATCA CTGCAACTAC CATTGAGGAA
  GTGAGAGGAG TCGGCCATGA CTCCGGACAC TCCATGTTGT CAGACCCTTG GATACTAATC
  TTGCCGAACG TTGTTCTGGA AAAGCTGATT CCTTGATGTG TCCTCACCTC TGGCGTGGTA
  Y
  GTTTGAAATC TTTGTATGAA TACCTTTGGG AGTGTTGGCA GCTGCACTGC ACGCATCTTG
  GAGTCACTGT GGGGTTTCCA GAAGGCTGCT GCCCCAGGGT ACTGCAACTT GCCCCCCAGC
  AGGCTGTCCT TGCTATTTCC ACTCATTCCC CAGACTGAAG ACCTTCAGAG TCTCTTAGCA
  GAGTGCTCTT CTCAAAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52037978	NES15054055	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36990014					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52037978	NES15054055	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103059537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22231	CpG island 22231	1022 bp distal
Rab6b	RAB6B, member RAS oncogene family	within coordinates
Tssr86769	transcription start site region 86769	909 bp downstream
Tssr86770	transcription start site region 86770	869 bp downstream
Tssr86771	transcription start site region 86771	999 bp upstream
Tssr86772	transcription start site region 86772	1027 bp upstream