rs36990066 SNP Detail

Summary

• ID
  rs36990066
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42773975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCATGAA GGGAGGGGCA
  AAAAATTAAT TGTCCTAAAT CCTTCTCTGT ATATAAGCTA TAGTTCCCTC CGCTTGAGGT
  GACTGTCACC ACCTTCTGTC TTACTATGAG CTCCCAAGTC TGTACACAAG TTCAGGATGA
  ACTGAAAGCT GCCCGTTCAT CTCACTGTGT AACCAACTCA GCAGTCAGCT TGCCTTTTCT
  S
  ACCCGGGTGA ACAGCGCTAC CTTGAGTTCC ATCTCCTGGA TGTTCTGGGG AAGTCCACAG
  CTACACACCA TCTGCACTGT GGACTCCGGG GCCCAGTTTT ACAAAGCTGC CCTGAGCACA
  CACCACACAG AGCACTCGGC AACACACATG GCCTTCACTT AAATCCCAGC AGAAGTGTCT
  CCAATTGTGA CAAAGTTAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52008970	NES15031350	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36990066					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52008970	NES15031350	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42773975 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	550 bp upstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	within coordinates
Rr677286	regulatory region 677286	1150 bp distal
Rr677287	regulatory region 677287	723 bp proximal