rs36990122 SNP Detail

Summary

• ID
  rs36990122
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127769095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGAGAGT GTCAGTCTCC
  CACTTGCTTA GCATCCCTGC TCACAACCCC CTCCACACTC CCACCTTCAC CTCCACCCTC
  ACTCCCACCT CCACCCTCCC TCTACCCAGA CTTCACCTCG AAGGGTCCTA TCCACCTAAA
  CTGGGAGGGG CCCTGAGCCC CTGCTCTCTA CCCTCCAGGC TTGTTAGACA AACTGGAGAA
  W
  TGAGTTCCAG GATGGGGTCT GAGCATCAAA GTGGCTACTG AATCAGTATG GCCAAGAGGC
  TCTGTTTCCA GAGTGAGGGA GATCTGGGGA ACACCAGAAA TCACAAGATG GAGAAAGATG
  GCTGAGAAGT ATTCAGAAGC AGGAGAGGCT CCTCCGCCAT TTGATAACAA AATATTGTGG
  GGGTTTTTGT TTGTTTCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51864537	NES14885841	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36990122					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51864537	NES14885841	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127769095 () rs orientation: forward

Symbol	Name	Function Class
Gm40402	predicted gene, 40402	within coordinates
Gm66979	predicted gene, 66979	within coordinates
Rr151534	regulatory region 151534	1616 bp distal
Tssr59045	transcription start site region 59045	1777 bp downstream