rs3699030 SNP Detail

Summary

• ID
  rs3699030
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13840504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG CGCGCGGTCG AGCTCCGTGG
  W
  GAGCCCACCC GGAGGAGGCG CTCCG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss5075217	WI_WGS_10_13854818	WI	MOUSE	f	SNP	T			A
ss38537829	mCV23171727	ABI	CRAMUS_MOUSE	f	SNP		T	T	A
ss146837600	ENSMUSSNP5173354	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss323255223	CHEV_10_13684566	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3699030					SNP	T	T	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13840504 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	1014 bp upstream
Cpgi1318	CpG island 1318	within coordinates
Gm56954	predicted gene, 56954	within coordinates
Gm66890	predicted gene, 66890	within coordinates
Hivep2	human immunodeficiency virus type I enhancer binding protein 2	1315 bp upstream
Rr384171	regulatory region 384171	within coordinates
Rr427854	regulatory region 427854	130 bp distal
Rr427855	regulatory region 427855	within coordinates
Rr427856	regulatory region 427856	972 bp proximal
Rr427857	regulatory region 427857	1507 bp proximal
Rr427858	regulatory region 427858	1630 bp proximal
Tssr3141	transcription start site region 3141	1351 bp upstream
Tssr92402	transcription start site region 92402	113 bp downstream
Tssr92403	transcription start site region 92403	36 bp upstream
Tssr92404	transcription start site region 92404	67 bp upstream
Tssr92405	transcription start site region 92405	89 bp upstream
Tssr92406	transcription start site region 92406	254 bp upstream
Tssr92407	transcription start site region 92407	479 bp upstream
Tssr92408	transcription start site region 92408	498 bp upstream
Tssr92409	transcription start site region 92409	530 bp upstream
Tssr92410	transcription start site region 92410	568 bp upstream
Tssr92411	transcription start site region 92411	1019 bp upstream
Tssr92412	transcription start site region 92412	1091 bp upstream
Tssr92413	transcription start site region 92413	1123 bp upstream
Tssr92414	transcription start site region 92414	1333 bp upstream
Tssr92415	transcription start site region 92415	1414 bp upstream
Tssr92416	transcription start site region 92416	1446 bp upstream
Tssr92417	transcription start site region 92417	1479 bp upstream
Tssr92418	transcription start site region 92418	1508 bp upstream
Tssr96784	transcription start site region 96784	884 bp downstream
Tssr96785	transcription start site region 96785	902 bp downstream
Tssr96786	transcription start site region 96786	1990 bp downstream