rs36990670 SNP Detail

Summary

• ID
  rs36990670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83018082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGTTGT TCAAAGATGA
  AGCTGTTGAA GGTCTCGGGA GGAAGTAAGG GGGAAGTAAG GAAGTAAGGA GGAAGTGAGG
  AAGTGAGGAG GTTGGGAAAT GAGCTGGGGT TATGTAGTGA AGAGCATGGC ACGCCAGAGG
  AGATTTGATT TTGACGCTCA GTGGGGCTCT TAAGTAGGAA GGTGGTAGTG ATGCGGATAA
  Y
  GGAATGGTAC TTAGGAAGGA TGAGGAAGTT AGTGCCTTAA AGTCTGACAC TGTGGGGAGG
  GAGCATGTTC AAGCTCTCAG AGGCAGCCTG GCTATGATCT CAGGATGCGG ATCTTTAGCA
  CCAAGACTAA AGAAATGGTA GAGGAATGGA AGAGAGAGCT GCATTTCATT TAAAAGCAGT
  AAACATAGAG CTCACTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50989456	NES13924174	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36990670					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50989456	NES13924174	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83018082 () rs orientation: forward

Symbol	Name	Function Class
Rr578836	regulatory region 578836	158 bp distal
Rr578837	regulatory region 578837	394 bp distal