rs3699089 SNP Detail

Summary

• ID
  rs3699089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75938948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAAGGGAT GACTGAAGGA GGCAATACAG CCTAAGAAAG
  TCCACAGGTT GATGCTAACG GACAGACTGG CGGTAGGTGG TGATAACCAT TAGCTCTGTC
  Y
  ATTGCAACGG AATCCAAGGA AAAGTGTGTA AAACCACGGG AGTGTATAAT TGGTGTGCTG
  AGCTCATTTT CTCACGTTAT CACAGCTGGC ATCTTCAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5075276	WI_WGS_2_76977189	WI	MOUSE	f	SNP	C			T
ss45288208	mCV23800675	ABI	CRAMUS_MOUSE	f	SNP		C	C	T	C
ss146770368	ENSMUSSNP3481894	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320352700	CHEV_2_75946661	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3699089					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75938948 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559651	regulatory region 559651	1050 bp proximal