rs36991886 SNP Detail

Summary

• ID
  rs36991886
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128070227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCAGTTC TGCCTCCTCT
  CCTCTCCCCT CCTCTCCAGC AAGTTATTCT CACGAAGCTA CCCCCCAACC ACATACTCTC
  AAGTGGCCTT TTTGGCACTG AGATGAGAGA TGAAGATCCC CAATCCATAC CAAGTTTCCC
  GTGTGACCTC CCACAGAAGG GCGCTATGAT TGGAGACTAC ACGGGGAATG GAGGCTCTCC
  W
  ATCTGGCCCG GGTGCTAGCA AATCTTTCAC AGCAGGGAAT TTTTCCTGTA ACAGCCACGT
  GGCTTTTTAA GTAAATTGAG TACCGGGTGT CACTGCCTCA ACCCTACCCT GGTGGAAGGG
  GCCTGTTGAG GCAGCTAGGT CTGAAGAAGG GGGGTGGGGA CAGGCCTCAG AGGAAGAGAG
  CATGGTGGGT AGAGTCTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51863763	NES14893040	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36991886					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51863763	NES14893040	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128070227 () rs orientation: forward

Symbol	Name	Function Class
Gm55163	predicted gene, 55163	1653 bp downstream
Rr639177	regulatory region 639177	1104 bp distal
Rr639179	regulatory region 639179	1567 bp distal
Rr639180	regulatory region 639180	177 bp distal
Rr639181	regulatory region 639181	1918 bp proximal
Tspan9	tetraspanin 9	within coordinates