rs3699191 SNP Detail

Summary

• ID
  rs3699191
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36395900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTA GACTGTGGGC CTCGGGGCTC
  R
  CGTGGGTTTC AGGGTCCCAG CCGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss5075378	WI_WGS_7_27211538	WI	MOUSE	f	SNP			G	A
ss46124593	mCV25433237	ABI	CRAMUS_MOUSE	f	SNP	A	G		A	G
ss148848953	ENSMUSSNP2188090	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G		G
ss322166724	CHEV_7_37481494	CHEVERUD	SCREENING_POP	f	SNP						G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs3699191					SNP	A	G	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36395900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	1957 bp distal
Cpgi18884	CpG island 18884	within coordinates
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	116 bp downstream
Gm72509	predicted gene, 72509	167 bp upstream
Rr645554	regulatory region 645554	564 bp distal
Rr645555	regulatory region 645555	within coordinates
Rr645556	regulatory region 645556	1153 bp proximal
Rr645557	regulatory region 645557	1654 bp proximal
Tshz3	teashirt zinc finger family member 3	1643 bp upstream
Tssr65916	transcription start site region 65916	151 bp upstream
Tssr65917	transcription start site region 65917	1527 bp upstream
Tssr65918	transcription start site region 65918	1737 bp upstream
Tssr72063	transcription start site region 72063	401 bp upstream