rs3699201 SNP Detail

Summary

• ID
  rs3699201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25378569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC ACAGTGGCAG ACACATAACT
  R
  GCTGCCGCCT TCAGGTGTTT GTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5075388	WI_WGS_17_24350598	WI	MOUSE	f	SNP					A			G
ss48356211	NES12249597	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A		G	G	A	G	G	G	G	G	G
ss145379413	ENSMUSSNP2248681	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3699201					SNP	A	A	G	A	A	A	A	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356211	NES12249597	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25378569 () rs orientation: forward

Symbol	Name	Function Class
Clcn7	chloride channel, voltage-sensitive 7	within coordinates
Mir12188	microRNA 12188	908 bp upstream
Tssr143140	transcription start site region 143140	59 bp upstream