rs36992098 SNP Detail

Summary

• ID
  rs36992098
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129005150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTAGCAA CAACTCTTGC
  CACTCCAGAA TTCAAATCTT GAGACAAGGA CGCCTGTAAT CTAGAGAACC TTCTATCTTT
  GATGCAAACG AGTCTACAGT AAAATGAGGC ATTGTGGGAG ATGGCACTGG GATGCCCACA
  GTTATACTGA GGTTTAAAAG GAGAAACTAG AATAGGATTA GTAAACACGT TGGGTAGAAA
  K
  ATCTGGATTC CTATTGACTT TAGTTATAGG TCATTGGCTG GCAAGTGCCA GGAGAAAATA
  TTTACTCTAC ACATATACTT TACGAACTTG AGGGAATTAA AGGAAATTCA ATAAGAAAAT
  GGCTAGAAAC ATTGAAAACC CTTATTTAAG AGACTTAAGC AAATTAGAGT CTTATCAGAT
  TAAAAACCAC TACAAATGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51624887	NES14657983	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36992098					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51624887	NES14657983	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129005150 () rs orientation: forward

Symbol	Name	Function Class
Gm27195	predicted gene 27195	within coordinates
Pitx2	paired-like homeodomain transcription factor 2	Intron
Rr584968	regulatory region 584968	1493 bp distal
Rr584969	regulatory region 584969	1182 bp distal
Rr584970	regulatory region 584970	661 bp proximal
Rr584971	regulatory region 584971	1981 bp proximal
Tssr1043	transcription start site region 1043	1477 bp downstream
Tssr31630	transcription start site region 31630	1489 bp downstream