rs3699223 SNP Detail

Summary

• ID
  rs3699223
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:59654907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAG TGGTTCAATC TCTATGAGCC
  W
  CCATGGGTCA AGCATAGTTG ACTCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5075410	WI_WGS_19_59727588	WI	MOUSE	f	SNP			A	T
ss146581060	ENSMUSSNP2711169	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3699223					SNP	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:59654907 () rs orientation: forward

Symbol	Name	Function Class
D19Mit76	DNA segment, Chr 19, Massachusetts Institute of Technology 76	1250 bp distal
D19Mit92	DNA segment, Chr 19, Massachusetts Institute of Technology 92	1250 bp distal
Gm19956	predicted gene, 19956	within coordinates