rs36992355 SNP Detail

Summary

• ID
  rs36992355
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36348297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGGGAGG ACCAGGCTTC
  AAAAACTCCT TGCTCTTTCT CTTCTTTCCT AGTGGCCTTC CGCTGCCCTC GGTGGGAAGC
  TGATCTGTAA TGATCTAGAT TGCCTCTTGG ACGAGTGTAG CAGGCACCGT GCTAGGGTGA
  GGAGAGGAGG AGAAAGGAAA AGTGAGGTCC GGAAGTTCCC TGTGTAGGGG TTTTGGCCTT
  S
  TGTTGAGTCA ACCTCTGCAG CTTGTTTCAG CATAGGTGGG GTGGGAAAAC CGGAAATGAT
  ACATAGAGAG AGCAATTTTC ATCAAACGTA TGGATGAAGG GTGGGGCGGT GAAGACTCAG
  TCCTCCCAGG AGTAGGATCT CTTGGGCTCT CTCAGGGCAG TTGGAGTCTG GAATCTCATA
  CCTGGTGCCC CTACACCCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51238011	NES14282186	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36992355					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238011	NES14282186	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36348297 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Cpgi139	CpG island 139	647 bp distal
Gm70585	predicted gene, 70585	1592 bp upstream
Rr366864	regulatory region 366864	1050 bp downstream
Rr395991	regulatory region 395991	1383 bp downstream
Rr409283	regulatory region 409283	1603 bp distal
Rr409284	regulatory region 409284	1437 bp distal
Rr409285	regulatory region 409285	within coordinates
Rr409286	regulatory region 409286	1570 bp proximal
Tssr6253	transcription start site region 6253	1481 bp downstream
Tssr6254	transcription start site region 6254	1453 bp downstream
Tssr6255	transcription start site region 6255	1437 bp downstream
Tssr6256	transcription start site region 6256	1141 bp downstream
Tssr6257	transcription start site region 6257	1067 bp downstream
Tssr6258	transcription start site region 6258	935 bp downstream
Tssr11252	transcription start site region 11252	403 bp downstream