rs36993001 SNP Detail

Summary

• ID
  rs36993001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:26472543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCACATCC ACGCTGAGTG
  AGAGAAGGGC CAACCTACTG TCTTGTTCAC TGCTGTATTG GGAGCACCTG GAACAACAGG
  TGGCTAATGC TACTTGTTCA AAACACCTGC CAAGGAAGGA ATAAGTTACT ACATAAATAA
  AGTGATGAAA CTAGCCACTT ACTCAACTCA CCCACTGTGT GGCCAGACCT ATCTCACTTG
  Y
  TTATGATGCC CAGAATTAAC CCCTGTCCCC AAAGCGTCTA CCTTTGCTCC AGTTCTGCAG
  TCTGTCTACT CTTGATCCCT CTTGCTGTCT TGACACTTTC TGACAGAGGT GGCCCAGAGC
  CACACTTTTA TTGGAGATAC CTGAAATTCA GCCTCCACAC ACCACACTCT TAGGACCCTC
  AAGCTCCCTT AAGGGGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51885203	NES14904408	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36993001					SNP	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51885203	NES14904408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:26472543 () rs orientation: forward

Symbol	Name	Function Class
Cyp2b19	cytochrome P450, family 2, subfamily b, polypeptide 19	488 bp downstream
D7Mit144	DNA segment, Chr 7, Massachusetts Institute of Technology 144	367 bp distal
Gm51442	predicted gene, 51442	within coordinates
Rr643909	regulatory region 643909	124 bp proximal
Tssr65194	transcription start site region 65194	1317 bp downstream