rs36993288 SNP Detail

Summary

• ID
  rs36993288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6921254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAAAAG GAAGAAGAAA
  GCTGAAGGTT AAAAGAAGGG ATGGGGGAGG GGACTGGAAA AATGGCTCAG TGGTTCAGAG
  CATTTACTAC CAGGCTGGCC TTGAACTCAG AAATCCTCAT GTCTCTGCCT CCCAAGTGCT
  GGGATCAAAG GCGTGCACCA CCGCCGCCCA GCTCAGTAGG TTCTTTCTTA CTCTATGGCT
  Y
  GCCTTCAGCC CGACTATTCT TGCCCAGATG GGACAGGCAG GTGACCCTAA GTGACAAACA
  AGAGCCGTGT GAAGCTGGAA AGTGTGAGTG AGTGCCAAGA TGGAAGGAGA GGCCTTGGAG
  ATACTGGTTA TACTCCCCAC TTCCCATTGC TGACCCTGTA TAGCCAGAGA AATCTGAGCT
  CAACCAGGTT TGTCACTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50594174	NES13645537	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36993288					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50594174	NES13645537	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6921254 () rs orientation: forward

Symbol	Name	Function Class
Bad	BCL2-associated agonist of cell death	within coordinates
Cpgi10534	CpG island 10534	1234 bp distal
Gm19053	predicted gene, 19053	1185 bp downstream
Gpr137	G protein-coupled receptor 137	1436 bp upstream
Rr405834	regulatory region 405834	1886 bp downstream
Rr405835	regulatory region 405835	1181 bp downstream
Rr543510	regulatory region 543510	1553 bp distal
Rr543512	regulatory region 543512	1312 bp distal
Tssr154697	transcription start site region 154697	1996 bp downstream
Tssr154698	transcription start site region 154698	1954 bp downstream
Tssr154699	transcription start site region 154699	1302 bp downstream
Tssr154700	transcription start site region 154700	1279 bp downstream
Tssr154701	transcription start site region 154701	1248 bp downstream
Tssr157904	transcription start site region 157904	1443 bp upstream