rs36993429 SNP Detail

Summary

• ID
  rs36993429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:75828026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTGGGAT AAAGCTGATA CGCTCTGAGT AACGATACTT
  GGAGACTGGA GGCAAATGCC TGGCTTCGTG TTTTCTCTTC TAGCTTCACT TACTGTGAGT
  R
  CACTTATTGG TATGCAAGAC CACAGGGCTC AGTGTGGGGA GACAGCTCCC TCCTTCCATT
  TTTGTAAGGT TTTTACTTCT GGAGGTTGAG CTCAGGCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50571129	NES14070334	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G	A	G	A	G	A		G	G	A	G		A
ss145201677	ENSMUSSNP4265203	ENSEMBL	ENSEMBL_Sanger	f	SNP								A
ss322714543	CHEV_8_77625297	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36993429					SNP	A	G	G	A	G	A	G	A	G	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50571129	NES14070334	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:75828026 () rs orientation: forward

Symbol	Name	Function Class
Hmox1	heme oxygenase 1	809 bp downstream
Tssr78063	transcription start site region 78063	1510 bp downstream
Tssr78064	transcription start site region 78064	1449 bp downstream
Tssr78065	transcription start site region 78065	1427 bp downstream
Tssr78066	transcription start site region 78066	1382 bp downstream
Tssr78067	transcription start site region 78067	1349 bp downstream
Tssr78068	transcription start site region 78068	1311 bp downstream
Tssr78069	transcription start site region 78069	1260 bp downstream
Tssr78070	transcription start site region 78070	1215 bp downstream
Tssr78071	transcription start site region 78071	1161 bp downstream
Tssr78072	transcription start site region 78072	1146 bp downstream
Tssr78073	transcription start site region 78073	1076 bp downstream
Tssr78074	transcription start site region 78074	1022 bp downstream
Tssr78075	transcription start site region 78075	1013 bp downstream
Tssr78076	transcription start site region 78076	968 bp downstream
Tssr78077	transcription start site region 78077	873 bp downstream
Tssr81820	transcription start site region 81820	805 bp upstream