rs36995529 SNP Detail

Summary

• ID
  rs36995529
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135398581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTCATTG GATAACTAAC
  AAAGCCAAGC GCTGAGTGAC AGAAAGTGAC AAACACAGAC CTCTGTGAGA GAGAGTGGGG
  GTGGGGGGGA CAGAGGGAGG GGGAGGGGGA GAGGGCAAGA ACTGTGTCCT TGTTACTATT
  TAGCACATTG CTATATAGTA TATAAAATGA TTCTTTTCCC TGATGATATA AATACAAAGC
  M
  TGAAAGCTCT GGTGAAACAA CAAAGTATAA AGTGTTTGTC TTTCCTCTGA GGACTAGGTG
  GGATGGGGAA AACTCTACAG TCTGCAAGGT GGGGCAGTCC CATTGTCAAA GGCACATAAA
  TAAGACTGTT ACAAAGGTAG AGGCAATGGG ATATACTACT AGAACACAAG TTGAAGACTG
  TTCATCAGCA AGAAGTATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51649040	NES14653469	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36995529					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649040	NES14653469	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135398581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	840 bp distal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	1273 bp upstream
Rr585767	regulatory region 585767	784 bp distal
Rr585768	regulatory region 585768	210 bp proximal
Tssr35825	transcription start site region 35825	1564 bp upstream
Tssr35826	transcription start site region 35826	1549 bp upstream
Tssr35827	transcription start site region 35827	1507 bp upstream
Tssr35828	transcription start site region 35828	1450 bp upstream
Tssr35829	transcription start site region 35829	1413 bp upstream
Tssr35830	transcription start site region 35830	1403 bp upstream
Tssr35831	transcription start site region 35831	1341 bp upstream
Tssr35832	transcription start site region 35832	1309 bp upstream
Tssr35833	transcription start site region 35833	1256 bp upstream
Tssr35834	transcription start site region 35834	839 bp upstream