rs36996036 SNP Detail

Summary

• ID
  rs36996036
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:87017667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAATTGCA ACATTCGCTT CAATTTTTAT TGTCATTTAA
  TAGACAAGAT TTATTTTACA TATTAGCCCT ATCATTACAC TTGTGTCAAC CTTTGTTTCT
  W
  GTTTTATTCC ACCTTTTGTG AGCCTGGAAA TAAAAAGGGG GGTAGTTTTG ATCAAAATTT
  GTATGTTGCA TAATTATAAT TCAGTTTAAA TTAAACAATC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss50555442	NES13667379	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs36996036					SNP	A	T	A	A	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50555442	NES13667379	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:87017667 () rs orientation: forward

Symbol	Name	Function Class
Rr394020	regulatory region 394020	917 bp upstream