rs36996048 SNP Detail

Summary

• ID
  rs36996048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36350368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTGCCAC TGGAAAGCTG
  TGTGACCCTG AGGCAGGTTG TCTGACTTCT CTGAGCCTCC AGTATTACAT CTGTTAAAAG
  GAAGATGATT CAGTAAGGCC TGCAGAGATG CTCAGCCCCA GGGAGCCCTG GAGAGATGAG
  CTTTGGTGGA GCCATAGCCA TAGCTAGCAG AAAGAGAAGT AAGGAATGGC TGGAAAACAC
  Y
  GGCAAGTTTG GAAAGGGAGA CTGAGACCCG GCCCTTAGTG CTGTAGCTTA GCATCCACAG
  CCCGAGCTGC CCCTGACACA GCCTTGACAT TGACCCATGA GGAGCTGCGG CAGCTTCCCT
  GCTGTACCTG TGCCCACCTG CCTGCGGCCT AGGAAGGGAC TCTGTCAAAC TGTGGTCTCC
  TTGTATAGAG GGTGGAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51238007	NES14282128	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36996048					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238007	NES14282128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36350368 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Gm70518	predicted gene, 70518	866 bp downstream
Rr409285	regulatory region 409285	1109 bp distal
Rr409286	regulatory region 409286	480 bp distal
Tssr11252	transcription start site region 11252	1664 bp upstream