rs36996066 SNP Detail

Summary

• ID
  rs36996066
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188738909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAGAGGT GCAAGGTCTC
  CAACTGTTAA AACTTTGCTT TGGAGGTAAA AGGTGACAAA GCAGGAAGAC CACCCCAAGT
  TCTCCAGCAC TCAGAGAGCC CATTGTTTCA CAACTGTTAA TTTGTATTTT TAAATAACAA
  AAGTGTTACA CGTTTAAAAT CTTAAGACAT TGAAAACTAG CCTTCCCAGG ACAACAGAAT
  M
  GCCTGCGCAT TAGAACCCCC CTCTCCCTCT ATTCTTACTA TGCCTTAAAC CCAAGCTTCC
  CTCAACTAGT AGGGGCAATA TCCTTTTCTG AGAAGAGTCA TGTGTAAGTC ACGGCAAATA
  CAAAAATGGG TTTTTGGTTT TGTTGCTTGT TTGGTTTGTT TGTTTGTTTT GCCAACAAAC
  TTCCACTCCA ACAAAATGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51419772	NES14449037	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36996066					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51419772	NES14449037	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188738909 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1193	CpG island 1193			253 bp proximal
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr372619	regulatory region 372619			within coordinates
Rr425737	regulatory region 425737			130 bp distal
Rr425738	regulatory region 425738			193 bp proximal
Rr425739	regulatory region 425739			1118 bp proximal
Tssr15707	transcription start site region 15707			1117 bp downstream
Tssr15708	transcription start site region 15708			1144 bp downstream
Tssr15709	transcription start site region 15709			1182 bp downstream