rs36997246 SNP Detail

Summary

• ID
  rs36997246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:69762853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TACGTATGTA CGAACATGGA TGGTAGAATG GTGAGCCTGG CTATTTTTCT
  CAGTCATCTT TTTCCCCCTT TTAACAACAA CGGTATGCCC AAGACGTTAG CAATGAAAAA
  ACACAGCTGA CCCACTGGGC ATTTGTTGTA GAGATATGAG ATGAACCATT AACAAGAGAA
  Y
  AAAGTCACCA TGTTGGATTA GATGACAATA AAGGAGTTTA GAGCCTGTGA TGAGGTTGAT
  GTGTTCTGTA TTACAGAAAC AGAAGAGGAC AGTGCAGAGC CAGAGTAGAA GAACGTTGAA
  GAGGTCTTTC TATTTTACTA TAATCATCTT GCTTATTAAA GTTTCTCAGT TATTCTGTGC
  TTACAAATGT TATTACCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51261984	NES14268062	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36997246					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51261984	NES14268062	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:69762853 () rs orientation: forward

Symbol	Name	Function Class
Gm70550	predicted gene, 70550	within coordinates
Rr371466	regulatory region 371466	within coordinates