rs36997432 SNP Detail

Summary

• ID
  rs36997432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136937490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGCAAT GTGATTCACC
  CCAGCATCCT CCTTCCTTCT TGGATTCAGT GCAGTATGGA AAGAGCCTCA GAAGCCAGGG
  TTTTCTTCCT CACTGGGATA ATCTGGGGCT ATCCTGAGGC AGGATTGGAT TTTGAGCAGT
  GTTGGCGATT TGTTTTTTGG GAGTACAAAG CAAGCAATAA ATCTGTCACC CTGAAAAAAT
  Y
  AGGTTGTGAC CTAAAGAAGG AGCAAATTGT GACTTCAGGT AAAAAAGAGT GACCTACCAG
  GGAGGGTAAT TCATCATGAT AACAAAAATG CCGGGCGCTC TCCAGGCCTG CCCAGGAGAA
  GGGCCGCAGT AAGCACATTC AGGAGATGCA AGTGTCCAAA TATTTTAAAC TGATCAATAT
  TTCCAGGGCT CACAAGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51384380	NES14473698	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36997432					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51384380	NES14473698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136937490 () rs orientation: forward

Symbol	Name	Function Class
Gm70790	predicted gene, 70790	within coordinates
Rr419562	regulatory region 419562	516 bp proximal
Rr419563	regulatory region 419563	622 bp proximal