rs36999606 SNP Detail

Summary

• ID
  rs36999606
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAT CTGCTTTAGG AAGACATTCT
  K
  TGTTGGACTG AGCTTGCTGG GGTAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50677574	NES14010812	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	G	G	G	G		G	T	G	G		G
ss322916254	CHEV_9_40264713	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36999606					SNP	T	G	T	T	G	G	G	G	T	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677574	NES14010812	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	761 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1703 bp distal
Rr676840	regulatory region 676840	874 bp distal
Rr676841	regulatory region 676841	1272 bp distal
Rr676842	regulatory region 676842	1553 bp proximal
Rr676843	regulatory region 676843	1924 bp proximal
Tssr84449	transcription start site region 84449	1807 bp downstream
Tssr84450	transcription start site region 84450	1218 bp downstream
Tssr84451	transcription start site region 84451	527 bp upstream
Tssr84452	transcription start site region 84452	555 bp upstream
Tssr84453	transcription start site region 84453	1296 bp upstream
Tssr88934	transcription start site region 88934	1744 bp upstream
Tssr88935	transcription start site region 88935	1693 bp upstream
Tssr88936	transcription start site region 88936	1672 bp upstream
Tssr88937	transcription start site region 88937	1608 bp upstream
Tssr88938	transcription start site region 88938	1351 bp upstream
Tssr88939	transcription start site region 88939	1316 bp upstream
Tssr88940	transcription start site region 88940	1284 bp upstream
Tssr88941	transcription start site region 88941	995 bp upstream
Tssr88942	transcription start site region 88942	980 bp upstream
Tssr88943	transcription start site region 88943	952 bp upstream
Tssr88944	transcription start site region 88944	904 bp upstream
Tssr88945	transcription start site region 88945	887 bp upstream
Tssr88946	transcription start site region 88946	791 bp upstream
Tssr88947	transcription start site region 88947	762 bp upstream
Tssr88948	transcription start site region 88948	732 bp upstream
Tssr88949	transcription start site region 88949	344 bp downstream