rs36999606 SNP Detail

Summary

• ID
  rs36999606
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAT CTGCTTTAGG AAGACATTCT
  K
  TGTTGGACTG AGCTTGCTGG GGTAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50677574	NES14010812	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	G	G	G	G		G	T	G	G		G
ss322916254	CHEV_9_40264713	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36999606					SNP	T	G	T	T	G	G	G	G	T	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677574	NES14010812	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368424 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gramd1b	GRAM domain containing 1B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr676839	regulatory region 676839			1703 bp distal
Rr676840	regulatory region 676840			874 bp distal
Rr676841	regulatory region 676841			1272 bp distal
Rr676842	regulatory region 676842			1553 bp proximal
Rr676843	regulatory region 676843			1924 bp proximal
Tssr84449	transcription start site region 84449			1807 bp downstream
Tssr84450	transcription start site region 84450			1218 bp downstream
Tssr84451	transcription start site region 84451			527 bp upstream
Tssr84452	transcription start site region 84452			555 bp upstream
Tssr84453	transcription start site region 84453			1296 bp upstream
Tssr88934	transcription start site region 88934			1744 bp upstream
Tssr88935	transcription start site region 88935			1693 bp upstream
Tssr88936	transcription start site region 88936			1672 bp upstream
Tssr88937	transcription start site region 88937			1608 bp upstream
Tssr88938	transcription start site region 88938			1351 bp upstream
Tssr88939	transcription start site region 88939			1316 bp upstream
Tssr88940	transcription start site region 88940			1284 bp upstream
Tssr88941	transcription start site region 88941			995 bp upstream
Tssr88942	transcription start site region 88942			980 bp upstream
Tssr88943	transcription start site region 88943			952 bp upstream
Tssr88944	transcription start site region 88944			904 bp upstream
Tssr88945	transcription start site region 88945			887 bp upstream
Tssr88946	transcription start site region 88946			791 bp upstream
Tssr88947	transcription start site region 88947			762 bp upstream
Tssr88948	transcription start site region 88948			732 bp upstream
Tssr88949	transcription start site region 88949			344 bp downstream