rs36999955 SNP Detail

Summary

• ID
  rs36999955
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42269669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTAAGCC TTGCTGAAGC
  TTGCACCCAC TCACCCGTGG CTGATAACGC TCAGGAAGTG AAATGAAGGT CTGGAGCCAG
  GGGCACCCAG CTCCAATATC TGGATGCCTG GTGAGTGGCG GGCAGGTGAT GTTGGGTTGG
  TTCAGAGTCT GCCCATCTTC CATAAAGTTT AACCTGGTAT TTTTTTCCTC CAATATAAGC
  W
  TCTTGGGTGT AGGAGACTTA ACCTTCTCAC TGAGGGGAGC TGGTTACCTT CTTCATGAGA
  AACCCACGAG GTCCTTAATC AACACTTGCT GAATGGACAC ACGGATAAAT GAATGCATAG
  TGTTTGCTTC TCAGGCGCAG TAACCTGAGA ACCTAGCTAG ACTTTTAAGA AAGCCCCTTA
  TAGTCCCCTC CCACACTATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50818803	NES13546197	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36999955					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50818803	NES13546197	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42269669 () rs orientation: forward

Symbol	Name	Function Class
Crtac1	cartilage acidic protein 1	1805 bp downstream
Gm34347	predicted gene, 34347	within coordinates
Mir3085	microRNA 3085	1060 bp upstream